Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_360

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8727 and 8728 are separated by 349 nucleotides8728 and 8729 are separated by 24 nucleotides mRNA_359: 8727 - BLAST minor histocompatibility antigen H13 [Kwoniella d..., at 838,218 to 839,816 8727 mRNA_360: 8728 - BLAST CBN-SNA-1 protein [Caenorhabditis brenneri], at 840,166 to 840,441 8728 mRNA_361: 8729 - Hypothetical Protein, at 840,466 to 840,977 8729

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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839,917 - -0.7
839,987 - +1.2
840,229 + 8728 mRNA_360 0.23 -0.0
840,467 - +0.7
840,513 - +0.5
840,516 + -1.0
841,231 - -0.4
841,263 + -0.8
841,264 + +0.8
841,367 - -0.2
841,370 - -0.5
841,375 - -0.4
841,410 + -0.6
841,434 + +0.1

Or see this region's nucleotide sequence