Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_365

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8732 and 8733 are separated by 115 nucleotides8733 and 8734 are separated by 280 nucleotides mRNA_364: 8732 - KOG2498 IK cytokine down-regulator of HLA class II, at 846,227 to 847,901 8732 mRNA_365: 8733 - K17945 TPM1_2 tropomyosin, fungi type, at 848,017 to 848,980 8733 mRNA_366: 8734 - HMMPfam-Thioredoxin-like-PF13905,SUPERFAMILY--SSF52833, at 849,261 to 850,411 8734

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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847,264 + 8732 mRNA_364 0.62 -0.5
847,522 - 8732 mRNA_364 0.77 +1.0
847,682 - 8732 mRNA_364 0.87 +1.4
847,804 - -2.1
847,945 - -0.5
847,945 + +2.8
847,969 + +1.6
849,294 + -1.7

Or see this region's nucleotide sequence