Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_382

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8749 and 8750 are separated by 250 nucleotides8750 and 8751 are separated by 627 nucleotides mRNA_381: 8749 - K10415 DYNC1I, DNCI dynein intermediate chain, cytosolic, at 886,747 to 889,332 8749 mRNA_382: 8750 - Hypothetical Protein, at 889,583 to 890,268 8750 mRNA_383: 8751 - K02922 RP-L37e, RPL37 large subunit ribosomal protein L37e, at 890,896 to 891,869 8751

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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889,568 + +0.6
889,569 + +0.4
889,585 + -0.8
889,673 + 8750 mRNA_382 0.13 -0.7
889,876 - 8750 mRNA_382 0.43 -0.4
889,981 - 8750 mRNA_382 0.58 -0.3
890,134 - 8750 mRNA_382 0.80 +0.4
890,142 + 8750 mRNA_382 0.81 -1.0
890,148 + 8750 mRNA_382 0.82 -2.3
890,440 - +1.1
890,443 - -0.4
890,453 - -1.8
890,480 - -1.6
890,605 - -2.1
890,612 + +0.5

Or see this region's nucleotide sequence