Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_445

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8812 and 8813 are separated by 279 nucleotides8813 and 8814 are separated by 856 nucleotides mRNA_444: 8812 - HMMPfam-Transcription factor IIIC subunit delta N-term-PF12657,HMMPfam-Putative zinc-finger of transcription factor IIIC complex-PF12660,SUPERFAMILY--SSF50978, at 1,030,821 to 1,034,414 8812 mRNA_445: 8813 - K03768 PPIB, ppiB peptidyl-prolyl cis-trans isomerase B (cyclophilin B), at 1,034,694 to 1,036,039 8813 mRNA_446: 8814 - K00254 DHODH, pyrD dihydroorotate dehydrogenase, at 1,036,896 to 1,038,649 8814

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,034,263 - +0.2
1,034,413 - -0.7
1,034,568 - -0.7
1,034,589 - -1.1
1,035,011 - 8813 mRNA_445 0.24 +0.5
1,035,609 - 8813 mRNA_445 0.68 +0.4
1,035,610 - 8813 mRNA_445 0.68 -0.9
1,035,841 - 8813 mRNA_445 0.85 -0.3
1,035,842 - 8813 mRNA_445 0.85 -1.1
1,035,842 + 8813 mRNA_445 0.85 -1.7
1,035,852 + 8813 mRNA_445 0.86 -0.3
1,035,868 + 8813 mRNA_445 0.87 -0.3
1,035,874 - 8813 mRNA_445 0.88 +0.9
1,036,023 - +0.6
1,036,161 + +1.0
1,036,178 + -0.2
1,036,192 - -0.9
1,036,325 - +1.0
1,036,334 - -1.8
1,036,627 - +0.0

Or see this region's nucleotide sequence