Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_458

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8825 and 8826 are separated by 309 nucleotides8826 and 8827 are separated by 80 nucleotides mRNA_457: 8825 - K14963 WDR5, SWD3, CPS30 COMPASS component SWD3, at 1,064,648 to 1,065,964 8825 mRNA_458: 8826 - KOG2676 Uncharacterized conserved protein, at 1,066,274 to 1,068,450 8826 mRNA_459: 8827 - K10598 PPIL2, CYC4, CHP60 peptidyl-prolyl cis-trans isomerase-like 2, at 1,068,531 to 1,071,036 8827

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,066,090 + -0.5
1,066,100 + +0.6
1,066,101 + +0.1
1,066,225 - -1.3
1,066,229 - +0.1
1,066,232 - -0.5
1,066,247 + +1.4
1,068,590 - -1.2
1,068,598 + -1.9
1,068,927 - 8827 mRNA_459 0.16 +0.4
1,069,149 + 8827 mRNA_459 0.25 -0.3
1,069,284 + 8827 mRNA_459 0.30 -0.0

Or see this region's nucleotide sequence