Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_505

Experiment: YNB Methylricinoleic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8872 and 8873 are separated by 349 nucleotides mRNA_504: 8872 - Hypothetical Protein, at 1,199,527 to 1,200,402 8872 mRNA_505: 8873 - HMMPfam-ubiE/COQ5 methyltransferase family-PF01209,SUPERFAMILY--SSF53335, at 1,200,752 to 1,201,768 8873

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
remove
1,199,833 - 8872 mRNA_504 0.35 +0.4
1,199,868 + 8872 mRNA_504 0.39 -0.7
1,199,895 - 8872 mRNA_504 0.42 +1.4
1,200,049 + 8872 mRNA_504 0.60 +0.3
1,200,161 + 8872 mRNA_504 0.72 -0.1
1,200,166 - 8872 mRNA_504 0.73 +0.2
1,200,215 - 8872 mRNA_504 0.79 +0.7
1,200,330 + -0.3
1,200,630 + +0.1
1,200,777 - -0.4
1,200,781 - -0.8
1,200,905 + 8873 mRNA_505 0.15 +1.1
1,201,078 + 8873 mRNA_505 0.32 +1.6
1,201,200 + 8873 mRNA_505 0.44 -1.1
1,201,210 - 8873 mRNA_505 0.45 +2.0
1,201,377 - 8873 mRNA_505 0.61 -0.8
1,201,383 + 8873 mRNA_505 0.62 +0.5
1,201,619 - 8873 mRNA_505 0.85 +0.1
1,201,637 - 8873 mRNA_505 0.87 +0.6
1,201,649 + 8873 mRNA_505 0.88 +0.8
1,201,788 + -0.1
1,201,795 - +0.5
1,201,801 - +1.3
1,201,806 + -0.6
1,201,811 + +0.4
1,201,826 + -0.2
1,201,828 + +0.6
1,201,829 - +0.3
1,201,839 - -0.7
1,201,870 + -0.4
1,201,900 - -0.3
1,201,917 - +1.7
1,201,941 - -0.2
1,201,945 + +0.9
1,201,949 + -1.1
1,201,968 + +2.0
1,201,971 - -2.5
1,201,974 + +0.0
1,201,978 + -2.8
1,201,979 - -0.3
1,201,991 - +0.6
1,202,090 + -0.1
1,202,093 - -0.4
1,202,100 - +1.2
1,202,263 - -0.2
1,202,271 - +0.1
1,202,367 + +1.7
1,202,550 + -0.7
1,202,564 + -0.2
1,202,682 - +0.3
1,202,705 + +0.9
1,202,713 + -0.5
1,202,718 + -1.1

Or see this region's nucleotide sequence