Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_512

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8879 and 8880 are separated by 107 nucleotides mRNA_511: 8879 - KOG1426 FOG RCC1 domain, at 1,216,193 to 1,218,102 8879 mRNA_512: 8880 - HMMPfam-Glutathione S-transferase, C-terminal domain-PF13410,HMMPfam-Glutathione S-transferase, N-terminal domain-PF13417,ProSiteProfiles-Soluble glutathione S-transferase N-terminal domain profile.-PS50404,ProSiteProfiles-Soluble glutathione S-transferase C-terminal domain profile.-PS50405,SUPERFAMILY--SSF47616,SUPERFAMILY--SSF52833, at 1,218,210 to 1,219,403 8880

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,217,441 - 8879 mRNA_511 0.65 +0.4
1,217,527 + 8879 mRNA_511 0.70 -0.2
1,218,048 + +0.3
1,218,438 - 8880 mRNA_512 0.19 +1.2
1,218,981 - 8880 mRNA_512 0.65 -0.4
1,219,119 - 8880 mRNA_512 0.76 +1.5
1,219,152 - 8880 mRNA_512 0.79 +0.0
1,219,170 - 8880 mRNA_512 0.80 -0.8
1,219,171 + 8880 mRNA_512 0.80 +0.3
1,219,205 + 8880 mRNA_512 0.83 -1.2
1,219,351 - -0.0
1,219,447 - -0.7
1,219,476 - +0.2
1,219,494 + -0.7
1,219,499 - +1.3
1,219,499 - +0.9
1,219,501 + +0.3
1,219,512 - +0.0
1,219,514 + -0.4
1,219,527 - -0.5
1,219,535 + -0.1
1,219,549 + +0.3
1,219,550 - +0.3
1,219,552 - +0.5
1,219,553 + +0.3
1,219,555 + -0.3
1,219,556 + -0.1
1,219,559 - -0.8
1,219,560 + -1.0
1,219,561 + +0.1
1,219,564 - -0.4
1,219,580 + +0.2
1,219,583 + -0.4
1,219,587 + +0.1
1,219,603 + -0.5
1,219,675 + +0.9
1,219,836 + -0.3
1,220,054 + +0.0
1,220,093 - -0.3
1,220,140 + +0.1
1,220,230 + -0.0
1,220,277 + -1.3

Or see this region's nucleotide sequence