Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_514

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8881 and 8882 are separated by 938 nucleotides8882 and 8883 are separated by 279 nucleotides mRNA_513: 8881 - K09468 MSN2_4 zinc finger protein MSN2/4, at 1,221,466 to 1,223,534 8881 mRNA_514: 8882 - KOG0417 Ubiquitin-protein ligase, at 1,224,473 to 1,225,235 8882 mRNA_515: 8883 - Hypothetical Protein, at 1,225,515 to 1,227,526 8883

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,223,739 - -0.6
1,224,084 - -2.8
1,224,094 + -1.5
1,224,175 - +1.4
1,224,483 + +0.6
1,225,052 + 8882 mRNA_514 0.76 -1.3
1,225,187 - -0.1
1,225,204 - +0.2
1,225,323 + -0.7
1,225,329 - +1.5
1,225,332 + +0.8
1,225,333 + -0.3
1,225,335 - -0.3
1,225,337 - -0.8
1,225,341 + +0.6
1,225,341 + +0.5
1,225,344 + -0.1
1,225,345 - +0.0
1,225,354 + +2.3
1,225,358 + +1.2
1,225,458 - +0.3
1,225,471 + +0.3
1,225,495 + +0.1
1,225,625 - +1.1
1,225,932 + 8883 mRNA_515 0.21 +0.5

Or see this region's nucleotide sequence