Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_552

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8919 and 8920 are separated by 237 nucleotides8920 and 8921 are separated by 200 nucleotides mRNA_551: 8919 - KOG1515 Arylacetamide deacetylase, at 1,313,966 to 1,316,695 8919 mRNA_552: 8920 - KOG1761 Signal recognition particle, subunit Srp14, at 1,316,933 to 1,317,920 8920 mRNA_553: 8921 - KOG0907 Thioredoxin, at 1,318,121 to 1,318,450 8921

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,316,538 - -1.0
1,317,082 - 8920 mRNA_552 0.15 -0.2
1,317,791 - 8920 mRNA_552 0.87 +0.0
1,317,802 + 8920 mRNA_552 0.88 +0.1
1,318,088 - -0.5
1,318,114 - +0.2
1,318,806 + -0.1

Or see this region's nucleotide sequence