Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_556

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8923 and 8924 are separated by 288 nucleotides8924 and 8925 are separated by 728 nucleotides mRNA_555: 8923 - K03115 CSNK2B casein kinase II subunit beta, at 1,321,464 to 1,322,533 8923 mRNA_556: 8924 - HMMPfam-Acetyltransferase (GNAT) domain-PF13302,SUPERFAMILY--SSF55729, at 1,322,822 to 1,323,921 8924 mRNA_557: 8925 - HMMPfam-Ras association (RalGDS/AF-6) domain-PF00788,ProSiteProfiles-Ras-associating (RA) domain profile.-PS50200,SMART-Ras association (RalGDS/AF-6) domain-SM00314,SUPERFAMILY--SSF54236, at 1,324,650 to 1,329,010 8925

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,322,897 + -0.7
1,323,003 + 8924 mRNA_556 0.16 +1.4
1,323,459 - 8924 mRNA_556 0.58 +2.7
1,323,488 + 8924 mRNA_556 0.61 -0.6
1,323,618 - 8924 mRNA_556 0.72 -0.4
1,323,633 + 8924 mRNA_556 0.74 +0.7
1,323,643 - 8924 mRNA_556 0.75 -0.4
1,323,747 + 8924 mRNA_556 0.84 +1.1
1,323,754 + 8924 mRNA_556 0.85 -0.8
1,323,894 + +0.5
1,324,074 + +0.2
1,324,359 + +0.3
1,324,364 + +0.0
1,324,375 + -0.4
1,324,386 - +0.5
1,324,394 + -2.2
1,324,479 - -1.3
1,324,556 + -0.5
1,324,670 + +0.8

Or see this region's nucleotide sequence