Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_590

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8957 and 8958 are separated by 274 nucleotides8958 and 8959 are separated by 114 nucleotides mRNA_589: 8957 - KOG1763 Uncharacterized conserved protein, contains CCCH-type Zn-finger, at 1,412,720 to 1,414,364 8957 mRNA_590: 8958 - K05543 DUS2 tRNA-dihydrouridine synthase 2, at 1,414,639 to 1,416,336 8958 mRNA_591: 8959 - K01915 glnA, GLUL glutamine synthetase, at 1,416,451 to 1,418,413 8959

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,413,756 - 8957 mRNA_589 0.63 -1.1
1,414,096 - 8957 mRNA_589 0.84 -2.4
1,414,210 + -1.5
1,414,278 - +0.2
1,414,538 - -0.1
1,414,540 + -0.8
1,414,541 + -0.6
1,414,544 - -0.5
1,414,547 - -0.3
1,414,644 - -0.7
1,415,338 - 8958 mRNA_590 0.41 +1.0
1,415,421 - 8958 mRNA_590 0.46 -1.4
1,416,242 - +0.2
1,416,854 - 8959 mRNA_591 0.21 +0.2
1,416,956 - 8959 mRNA_591 0.26 +0.7

Or see this region's nucleotide sequence