Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_598

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8965 and 8966 are separated by 910 nucleotides8966 and 8967 are separated by 133 nucleotides mRNA_597: 8965 - ProSiteProfiles-APSES-type HTH DNA-binding domain profile.-PS51299,SUPERFAMILY--SSF54616, at 1,435,317 to 1,436,977 8965 mRNA_598: 8966 - ProSiteProfiles-F-box domain profile.-PS50181, at 1,437,888 to 1,441,324 8966 mRNA_599: 8967 - HMMPfam-2'-5' RNA ligase superfamily-PF13563,SUPERFAMILY--SSF55144, at 1,441,458 to 1,442,153 8967

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,436,952 - +3.7
1,436,954 + -0.5
1,437,210 - +0.1
1,437,218 + -0.8
1,437,219 - -0.0
1,437,222 + +1.8
1,437,223 + +0.8
1,437,242 + -0.2
1,437,243 - +1.6
1,437,255 - -0.5
1,437,281 - -1.1
1,437,295 - +0.6
1,437,301 + -0.8
1,437,321 - +0.0
1,437,329 - +0.3
1,437,334 + +0.5
1,437,349 + +0.3
1,437,360 - -0.5
1,437,383 + +0.8
1,437,399 - +0.8
1,437,401 - -2.3
1,437,402 - +0.5
1,437,456 - +1.2
1,437,505 + +0.8
1,437,534 - +0.5
1,437,558 + +0.2
1,437,558 + -2.4
1,437,716 - +0.2
1,437,827 + -1.0
1,437,862 + -1.0
1,438,002 + +2.0
1,438,257 + 8966 mRNA_598 0.11 -2.0
1,438,428 + 8966 mRNA_598 0.16 +0.3
1,438,566 + 8966 mRNA_598 0.20 -1.4
1,438,846 - 8966 mRNA_598 0.28 +1.4
1,439,253 + 8966 mRNA_598 0.40 -0.7
1,439,300 + 8966 mRNA_598 0.41 +1.7
1,439,357 - 8966 mRNA_598 0.43 +1.1
1,439,709 + 8966 mRNA_598 0.53 +0.2
1,439,833 + 8966 mRNA_598 0.57 +0.0
1,440,138 + 8966 mRNA_598 0.65 +1.9
1,440,901 + 8966 mRNA_598 0.88 -1.1
1,440,909 + 8966 mRNA_598 0.88 -2.5
1,441,048 - -0.7
1,441,247 + +0.2
1,441,287 - -0.4
1,441,319 + +0.1
1,441,636 + 8967 mRNA_599 0.26 +2.6
1,441,648 - 8967 mRNA_599 0.27 -1.3
1,441,759 + 8967 mRNA_599 0.43 +1.9
1,441,801 + 8967 mRNA_599 0.49 -0.2
1,441,945 + 8967 mRNA_599 0.70 -1.0
1,442,065 - 8967 mRNA_599 0.87 -0.0
1,442,200 - -0.9
1,442,223 - -0.3

Or see this region's nucleotide sequence