Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_600

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8968 and 8969 are separated by 428 nucleotides mRNA_600: 8968 - K17785 IMMT, FCJ1, MNOS2 mitofilin, at 1,443,273 to 1,445,582 8968 mRNA_601: 8969 - K01784 galE, GALE UDP-glucose 4-epimerase, at 1,446,011 to 1,447,734 8969

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,442,414 - -1.8
1,442,548 + -0.5
1,442,548 + -0.2
1,442,554 - -0.7
1,442,660 + +1.5
1,442,814 + +1.5
1,442,818 - +0.3
1,442,819 + -0.5
1,442,955 - -0.3
1,442,988 + +0.2
1,443,083 + -0.4
1,443,091 - +1.8
1,443,105 - -1.6
1,443,122 - +0.5
1,443,136 + -0.3
1,443,136 + -0.6
1,443,138 - +1.2
1,443,152 + -2.6
1,443,420 - -0.9
1,443,432 - -2.7
1,443,570 - 8968 mRNA_600 0.13 -2.1
1,443,573 + 8968 mRNA_600 0.13 -1.5
1,443,666 + 8968 mRNA_600 0.17 -3.1
1,443,736 - 8968 mRNA_600 0.20 -1.2
1,443,977 - 8968 mRNA_600 0.30 -2.1
1,444,019 + 8968 mRNA_600 0.32 -1.4
1,444,019 - 8968 mRNA_600 0.32 -2.0
1,444,161 + 8968 mRNA_600 0.38 -1.5
1,444,283 + 8968 mRNA_600 0.44 -1.1
1,444,604 - 8968 mRNA_600 0.58 -1.8
1,444,631 + 8968 mRNA_600 0.59 +0.4
1,444,767 + 8968 mRNA_600 0.65 -1.0
1,445,058 + 8968 mRNA_600 0.77 +0.1
1,445,521 - -1.3
1,445,629 - -1.4
1,445,632 + +0.8
1,445,651 + +0.1
1,445,908 - +1.5
1,445,915 - +0.5
1,445,921 - -0.4
1,445,926 + +0.2
1,445,927 - -0.2
1,445,932 + -1.2
1,445,937 - -0.4
1,445,943 + +0.8
1,445,958 + +1.0

Or see this region's nucleotide sequence