Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_700

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9067 and 9068 are separated by 220 nucleotides9068 and 9069 are separated by 100 nucleotides mRNA_699: 9067 - K20289 COG2 conserved oligomeric Golgi complex subunit 2, at 1,669,102 to 1,672,155 9067 mRNA_700: 9068 - K12398 AP3M AP-3 complex subunit mu, at 1,672,376 to 1,674,226 9068 mRNA_701: 9069 - K08776 NPEPPS puromycin-sensitive aminopeptidase, at 1,674,327 to 1,678,341 9069

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,672,224 - +1.9
1,672,354 - +1.5
1,672,363 + +0.1
1,672,367 - +1.3
1,672,660 + 9068 mRNA_700 0.15 -0.1
1,674,276 - -1.0
1,674,311 + -0.3
1,674,391 + -0.2
1,674,602 - +2.3
1,675,153 + 9069 mRNA_701 0.21 -0.4
1,675,159 - 9069 mRNA_701 0.21 +0.1

Or see this region's nucleotide sequence