Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_710

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9077 and 9078 are separated by 102 nucleotides9078 and 9079 are separated by 549 nucleotides mRNA_709: 9077 - K08775 BRCA2, FANCD1 breast cancer 2 susceptibility protein, at 1,694,399 to 1,698,266 9077 mRNA_710: 9078 - Hypothetical Protein, at 1,698,369 to 1,699,949 9078 mRNA_711: 9079 - K00972 UAP1 UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine diphosphorylase, at 1,700,499 to 1,702,038 9079

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,698,479 - -0.6
1,698,529 + 9078 mRNA_710 0.10 +0.6
1,698,530 + 9078 mRNA_710 0.10 -0.7
1,698,962 - 9078 mRNA_710 0.38 +2.3
1,699,046 + 9078 mRNA_710 0.43 +2.0
1,699,154 - 9078 mRNA_710 0.50 -0.3
1,699,205 + 9078 mRNA_710 0.53 +0.5
1,699,278 + 9078 mRNA_710 0.57 +0.9
1,699,559 - 9078 mRNA_710 0.75 -0.3
1,699,578 + 9078 mRNA_710 0.76 -1.6
1,699,649 + 9078 mRNA_710 0.81 +0.3
1,699,701 - 9078 mRNA_710 0.84 +0.1
1,699,734 + 9078 mRNA_710 0.86 -0.9
1,699,948 - +0.1
1,700,043 + +0.0
1,700,175 + +1.2
1,700,189 + -0.8
1,700,280 - +2.4
1,700,378 - -0.1
1,700,452 + +0.1

Or see this region's nucleotide sequence