Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_749

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9116 and 9117 are separated by 322 nucleotides9117 and 9118 are separated by 92 nucleotides mRNA_748: 9116 - Hypothetical Protein, at 1,787,526 to 1,789,386 9116 mRNA_749: 9117 - Hypothetical Protein, at 1,789,709 to 1,790,560 9117 mRNA_750: 9118 - K12840 RBM17, SPF45 splicing factor 45, at 1,790,653 to 1,793,277 9118

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,788,917 + 9116 mRNA_748 0.75 -0.7
1,789,471 + +3.0
1,789,522 + +2.5
1,789,598 - -0.4
1,789,635 - -0.6
1,789,637 + -0.9
1,789,647 - +1.0
1,789,823 + 9117 mRNA_749 0.13 -2.3
1,790,511 + -0.3
1,790,532 - +0.5
1,790,986 + 9118 mRNA_750 0.13 +2.6
1,790,997 + 9118 mRNA_750 0.13 -0.4
1,791,403 - 9118 mRNA_750 0.29 -1.2
1,791,465 + 9118 mRNA_750 0.31 -1.2

Or see this region's nucleotide sequence