Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_767

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9134 and 9135 are separated by 166 nucleotides9135 and 9136 are separated by 241 nucleotides mRNA_766: 9134 - K02899 RP-L27, MRPL27, rpmA large subunit ribosomal protein L27, at 1,827,943 to 1,828,724 9134 mRNA_767: 9135 - K01182 IMA, malL oligo-1,6-glucosidase, at 1,828,891 to 1,831,051 9135 mRNA_768: 9136 - Hypothetical Protein, at 1,831,293 to 1,832,129 9136

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,828,831 - -0.6
1,828,878 - -0.9
1,829,003 - +1.4
1,829,282 - 9135 mRNA_767 0.18 +0.1
1,829,389 + 9135 mRNA_767 0.23 +0.2
1,829,669 - 9135 mRNA_767 0.36 +0.2
1,829,966 - 9135 mRNA_767 0.50 -0.3
1,830,095 - 9135 mRNA_767 0.56 -0.2
1,830,409 + 9135 mRNA_767 0.70 +0.6
1,830,553 + 9135 mRNA_767 0.77 +1.8
1,830,693 + 9135 mRNA_767 0.83 -0.9
1,830,990 + +0.7
1,831,129 - -0.9
1,831,147 + -1.1
1,831,163 + +0.5
1,831,216 + -0.1
1,831,231 - -0.1
1,831,240 + -0.9
1,831,254 + +0.5
1,831,258 - +1.1
1,831,279 - +0.8
1,831,281 + -0.3
1,831,281 - -0.7
1,831,328 + -0.2
1,831,328 + +1.8
1,831,372 - -0.4
1,831,374 - +0.6
1,831,381 - 9136 mRNA_768 0.11 -0.5
1,831,383 - 9136 mRNA_768 0.11 +0.3
1,831,385 - 9136 mRNA_768 0.11 +0.2
1,831,415 + 9136 mRNA_768 0.15 -0.1
1,831,417 - 9136 mRNA_768 0.15 -0.6
1,831,443 + 9136 mRNA_768 0.18 -1.5
1,831,445 + 9136 mRNA_768 0.18 +0.2
1,831,447 + 9136 mRNA_768 0.18 +0.0
1,831,462 + 9136 mRNA_768 0.20 -0.7
1,831,489 - 9136 mRNA_768 0.23 -0.2
1,831,490 + 9136 mRNA_768 0.24 +0.3
1,831,504 + 9136 mRNA_768 0.25 +0.0
1,831,510 - 9136 mRNA_768 0.26 +0.1
1,831,513 - 9136 mRNA_768 0.26 +1.1
1,831,527 - 9136 mRNA_768 0.28 -1.2
1,831,531 + 9136 mRNA_768 0.28 +0.8
1,831,552 + 9136 mRNA_768 0.31 +1.4
1,831,565 + 9136 mRNA_768 0.32 -0.3
1,831,566 + 9136 mRNA_768 0.33 -2.7
1,831,584 - 9136 mRNA_768 0.35 -1.3
1,831,593 - 9136 mRNA_768 0.36 -0.6
1,831,600 + 9136 mRNA_768 0.37 +1.1
1,831,620 - 9136 mRNA_768 0.39 +0.6
1,831,626 + 9136 mRNA_768 0.40 +3.0
1,831,637 + 9136 mRNA_768 0.41 +1.4
1,831,656 + 9136 mRNA_768 0.43 +0.6
1,831,733 + 9136 mRNA_768 0.53 +0.3
1,831,757 - 9136 mRNA_768 0.55 -0.7
1,831,757 + 9136 mRNA_768 0.55 +0.5
1,831,776 + 9136 mRNA_768 0.58 -0.9
1,831,802 + 9136 mRNA_768 0.61 +0.1
1,831,840 + 9136 mRNA_768 0.65 -0.4
1,831,843 - 9136 mRNA_768 0.66 +1.4
1,831,850 - 9136 mRNA_768 0.67 -0.0
1,831,869 + 9136 mRNA_768 0.69 -1.0
1,831,873 + 9136 mRNA_768 0.69 -2.1
1,831,882 - 9136 mRNA_768 0.70 -0.4
1,831,886 + 9136 mRNA_768 0.71 -0.9
1,831,897 + 9136 mRNA_768 0.72 +0.2
1,831,912 - 9136 mRNA_768 0.74 -0.8
1,831,923 + 9136 mRNA_768 0.75 -0.7
1,831,927 + 9136 mRNA_768 0.76 +0.3
1,831,992 - 9136 mRNA_768 0.84 -4.2

Or see this region's nucleotide sequence