Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_799

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9166 and 9167 are separated by 344 nucleotides9167 and 9168 are separated by 450 nucleotides mRNA_798: 9166 - K15376 GPHN gephyrin, at 1,898,956 to 1,901,377 9166 mRNA_799: 9167 - K01893 NARS, asnS asparaginyl-tRNA synthetase, at 1,901,722 to 1,903,948 9167 mRNA_800: 9168 - K10418 DYNLL dynein light chain LC8-type, at 1,904,399 to 1,905,250 9168

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,900,766 + 9166 mRNA_798 0.75 +0.5
1,901,060 - 9166 mRNA_798 0.87 +0.4
1,901,345 + +0.6
1,901,379 + -2.2
1,901,401 - -1.8
1,901,512 + +0.3
1,904,005 + -1.1
1,904,274 + +0.9
1,904,288 + +0.6

Or see this region's nucleotide sequence