Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_806

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9173 and 9174 are separated by 273 nucleotides9174 and 9175 are separated by 608 nucleotides mRNA_805: 9173 - K09191 GTF3A general transcription factor IIIA, at 1,913,396 to 1,915,422 9173 mRNA_806: 9174 - KOG1515 Arylacetamide deacetylase, at 1,915,696 to 1,917,845 9174 mRNA_807: 9175 - Hypothetical Protein, at 1,918,454 to 1,920,655 9175

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,915,423 + +0.2
1,915,480 - -0.2
1,915,860 + -0.3
1,916,118 - 9174 mRNA_806 0.20 -0.5
1,916,120 - 9174 mRNA_806 0.20 +1.4
1,916,134 - 9174 mRNA_806 0.20 +1.6
1,916,327 - 9174 mRNA_806 0.29 +0.5
1,916,402 - 9174 mRNA_806 0.33 -0.4
1,916,850 + 9174 mRNA_806 0.54 -0.2
1,917,510 - 9174 mRNA_806 0.84 -0.8
1,917,579 - 9174 mRNA_806 0.88 -2.4
1,917,901 + +1.9
1,917,903 + +1.3
1,917,904 - -0.1
1,917,904 + -1.8
1,917,919 - +0.1
1,917,920 - -0.6
1,917,922 + -1.2
1,917,922 + -0.3
1,917,925 + +0.8
1,917,927 + -0.5
1,917,932 - -0.7
1,917,934 + +0.8
1,917,960 - +2.1
1,917,964 - +0.2
1,917,967 + -0.5
1,917,972 + -0.2
1,917,981 - +0.8
1,918,152 - +0.1
1,918,173 - +1.6
1,918,174 + -0.2
1,918,178 - -0.0
1,918,184 - -1.4
1,918,194 - +0.9
1,918,309 - +1.2
1,918,466 + +0.9
1,918,466 + +0.7
1,918,467 - -1.3
1,918,493 - +0.3
1,918,505 + -0.1
1,918,655 - +0.1

Or see this region's nucleotide sequence