Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_821

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9188 and 9189 are separated by 725 nucleotides9189 and 9190 are separated by 549 nucleotides mRNA_820: 9188 - K20495 CYP704B1 long-chain fatty acid omega-monooxygenase, at 1,958,610 to 1,960,839 9188 mRNA_821: 9189 - K14301 NUP107, NUP84 nuclear pore complex protein Nup107, at 1,961,565 to 1,964,829 9189 mRNA_822: 9190 - HMMPfam-Sec7 domain-PF01369,HMMPfam-Pleckstrin homology domain-PF15410,ProSiteProfiles-PH domain profile.-PS50003,ProSiteProfiles-SEC7 domain profile.-PS50190,SMART-Sec7 domain-SM00222,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF48425,SUPERFAMILY--SSF50729, at 1,965,379 to 1,971,450 9190

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,961,048 + -0.3
1,961,070 - -1.1
1,961,150 - -0.1
1,961,173 + +1.7
1,961,177 + +0.1
1,961,183 + -0.7
1,961,195 + +2.2
1,961,215 - +2.3
1,961,344 + +0.4
1,961,452 - +0.7
1,961,457 - -0.4
1,961,465 + -1.3
1,961,465 - -1.4
1,961,490 - +0.5
1,964,793 + +1.0
1,964,896 - -1.3
1,964,904 + -0.3
1,964,910 - -0.2
1,964,910 - +1.3
1,964,922 + -1.1
1,964,932 + +1.1
1,964,936 + -0.6
1,964,936 + -0.2
1,965,043 - +0.7
1,965,075 - +0.6
1,965,402 + -0.9
1,965,520 + -0.7
1,965,724 - +0.7
1,965,760 - +0.0
1,965,813 - +0.1
1,965,817 + -1.3
1,965,818 - +0.3

Or see this region's nucleotide sequence