Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_828

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9195 and 9196 are separated by 525 nucleotides9196 and 9197 are separated by 689 nucleotides mRNA_827: 9195 - Hypothetical Protein, at 1,979,229 to 1,980,332 9195 mRNA_828: 9196 - HMMPfam-Protein of unknown function (DUF2420)-PF10336, at 1,980,858 to 1,983,509 9196 mRNA_829: 9197 - HMMPfam-Spc7 kinetochore protein-PF08317,SMART-Spc7 kinetochore protein-SM00787, at 1,984,199 to 1,988,562 9197

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,979,956 - 9195 mRNA_827 0.66 +0.9
1,980,069 - 9195 mRNA_827 0.76 -1.6
1,980,080 + 9195 mRNA_827 0.77 -0.0
1,980,177 - 9195 mRNA_827 0.86 -0.1
1,980,233 - +1.1
1,980,244 + -0.1
1,980,355 - -1.3
1,980,368 - +0.2
1,980,369 + -0.1
1,980,375 + +0.9
1,980,377 + -1.1
1,980,399 - +1.4
1,980,442 + -0.5
1,980,442 - -2.2
1,980,442 - +1.4
1,980,508 + +0.4
1,980,512 - -0.0
1,980,524 - -0.1
1,980,538 + +2.6
1,980,553 - +0.1
1,980,556 - -1.2
1,980,574 - +0.8
1,980,632 - -1.2
1,980,666 - -0.2
1,980,678 - -1.2
1,980,797 - +0.0
1,980,833 - -0.4
1,984,010 + -0.8
1,984,043 + -2.1

Or see this region's nucleotide sequence