Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_840

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9207 and 9208 are separated by 541 nucleotides9208 and 9209 are separated by 758 nucleotides mRNA_839: 9207 - BLAST protein of unknown function DUF1746, fungi [Rhodo..., at 2,010,895 to 2,011,512 9207 mRNA_840: 9208 - BLAST protein of unknown function DUF1746, fungi [Rhodo..., at 2,012,054 to 2,014,320 9208 mRNA_841: 9209 - HMMPfam-Kinetochore protein CHL4 like-PF05238, at 2,015,079 to 2,016,824 9209

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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2,011,512 - +0.4
2,011,529 + -0.9
2,011,582 - +0.8
2,011,680 + +0.9
2,011,685 + +1.4
2,012,006 + +0.1
2,012,144 - -1.7
2,012,273 + -0.4
2,012,432 - 9208 mRNA_840 0.17 -0.4
2,012,452 + 9208 mRNA_840 0.18 -1.0
2,014,352 - +0.9
2,014,365 - +1.0
2,014,382 - -0.8
2,014,460 + +0.5
2,014,514 - +0.2
2,014,537 - -0.1
2,014,555 + +1.0
2,014,573 - +0.5
2,014,573 + -0.5
2,014,622 + +0.5
2,014,652 + -0.0
2,014,774 + +0.3
2,014,953 + +0.9
2,014,959 - +1.9
2,014,975 + -0.4
2,015,100 + -2.9

Or see this region's nucleotide sequence