Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_854

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9221 and 9222 are separated by 75 nucleotides9222 and 9223 are separated by 286 nucleotides mRNA_853: 9221 - K13125 NOSIP nitric oxide synthase-interacting protein, at 2,044,185 to 2,045,369 9221 mRNA_854: 9222 - K01620 ltaE threonine aldolase, at 2,045,445 to 2,046,969 9222 mRNA_855: 9223 - BLAST Phosphoribosyltransferase C-terminal [Ceraceosorus bo..., at 2,047,256 to 2,049,795 9223

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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2,044,866 + 9221 mRNA_853 0.57 +0.4
2,044,874 + 9221 mRNA_853 0.58 +0.7
2,045,028 - 9221 mRNA_853 0.71 -0.2
2,045,029 + 9221 mRNA_853 0.71 +0.8
2,045,109 + 9221 mRNA_853 0.78 -1.0
2,045,153 + 9221 mRNA_853 0.82 -3.0
2,045,984 + 9222 mRNA_854 0.35 -0.5
2,046,038 + 9222 mRNA_854 0.39 -0.2
2,046,188 + 9222 mRNA_854 0.49 +1.0
2,046,627 + 9222 mRNA_854 0.78 -1.7
2,046,634 + 9222 mRNA_854 0.78 +0.7
2,046,769 - 9222 mRNA_854 0.87 -0.5
2,046,918 + +0.3
2,046,920 - -0.5
2,047,031 - -1.6
2,047,031 - +0.4
2,047,080 - -1.0
2,047,087 + +0.2
2,047,090 + -0.6
2,047,096 + -1.4
2,047,105 + -0.3
2,047,116 - -0.0
2,047,157 - -0.1
2,047,198 - +1.5
2,047,399 - -1.3
2,047,691 - 9223 mRNA_855 0.17 -0.6
2,047,946 + 9223 mRNA_855 0.27 -0.4

Or see this region's nucleotide sequence