Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_892

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9259 and 9260 are separated by 456 nucleotides mRNA_891: 9259 - K01405 PRD1 saccharolysin, at 2,128,133 to 2,130,693 9259 mRNA_892: 9260 - K11827 AP2S1 AP-2 complex subunit sigma-1, at 2,131,150 to 2,131,840 9260

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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2,130,180 + 9259 mRNA_891 0.80 +0.2
2,130,189 + 9259 mRNA_891 0.80 +0.3
2,130,315 + 9259 mRNA_891 0.85 +0.1
2,130,447 + +0.5
2,130,519 + -0.3
2,130,612 - +0.1
2,130,708 + +0.3
2,130,771 + -1.5
2,130,857 - +1.2
2,130,857 - -0.3
2,131,043 + +0.4
2,131,062 + +0.6
2,131,063 + -1.5
2,131,641 - 9260 mRNA_892 0.71 +0.6
2,131,744 - 9260 mRNA_892 0.86 -1.0
2,131,755 + 9260 mRNA_892 0.88 +1.0
2,131,890 - -0.3
2,131,926 + +0.6
2,132,160 - +0.5
2,132,190 - +0.1
2,132,504 - -0.5
2,132,518 + +0.3
2,132,519 - -0.1
2,132,651 - -0.4
2,132,840 + -0.0

Or see this region's nucleotide sequence