Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_908

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9275 and 9276 are separated by 87 nucleotides9276 and 9277 are separated by 290 nucleotides mRNA_907: 9275 - K20523 SH3YL1 SH3 domain-containing YSC84-like protein 1, at 2,170,887 to 2,172,443 9275 mRNA_908: 9276 - Hypothetical Protein, at 2,172,531 to 2,173,610 9276 mRNA_909: 9277 - KOG0254 Predicted transporter (major facilitator superfamily), at 2,173,901 to 2,176,309 9277

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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2,171,834 - 9275 mRNA_907 0.61 -0.3
2,171,872 + 9275 mRNA_907 0.63 -2.8
2,172,568 - -0.1
2,172,730 + 9276 mRNA_908 0.18 +0.2
2,172,731 - 9276 mRNA_908 0.19 +0.5
2,172,737 + 9276 mRNA_908 0.19 +1.2
2,172,740 + 9276 mRNA_908 0.19 -0.6
2,172,742 - 9276 mRNA_908 0.20 -0.3
2,172,746 + 9276 mRNA_908 0.20 +0.7
2,172,751 - 9276 mRNA_908 0.20 +1.3
2,172,763 + 9276 mRNA_908 0.21 +0.8
2,172,766 + 9276 mRNA_908 0.22 -0.0
2,172,772 + 9276 mRNA_908 0.22 -0.1
2,172,780 + 9276 mRNA_908 0.23 -0.8
2,172,784 + 9276 mRNA_908 0.23 +2.5
2,172,786 - 9276 mRNA_908 0.24 +0.3
2,172,787 - 9276 mRNA_908 0.24 -1.4
2,172,788 + 9276 mRNA_908 0.24 -0.8
2,172,794 + 9276 mRNA_908 0.24 +0.2
2,172,801 + 9276 mRNA_908 0.25 +0.1
2,172,918 - 9276 mRNA_908 0.36 +2.1
2,172,934 - 9276 mRNA_908 0.37 +0.3
2,173,039 - 9276 mRNA_908 0.47 -1.3
2,173,079 + 9276 mRNA_908 0.51 +0.6
2,173,346 - 9276 mRNA_908 0.75 +1.3
2,173,362 - 9276 mRNA_908 0.77 +0.8
2,173,778 + +0.0
2,173,781 - -0.1
2,174,501 + 9277 mRNA_909 0.25 +0.2

Or see this region's nucleotide sequence