Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_947

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9314 and 9315 are separated by 152 nucleotides9315 and 9316 are separated by 119 nucleotides mRNA_946: 9314 - Hypothetical Protein, at 38,031 to 38,831 9314 mRNA_947: 9315 - K00623 CHAT choline O-acetyltransferase, at 38,984 to 41,581 9315 mRNA_948: 9316 - KOG2641 Predicted seven transmembrane receptor - rhodopsin family, at 41,701 to 44,858 9316

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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37,984 + -0.7
37,990 + -1.1
37,993 + +0.7
37,999 + -0.6
38,002 + +0.2
38,004 + -1.0
38,004 + -0.2
38,004 + -0.8
38,006 - +0.2
38,008 + +1.0
38,026 - -0.2
38,026 - -0.6
38,052 + +0.4
38,064 + +0.1
38,101 + -0.1
38,104 + -1.4
38,150 + 9314 mRNA_946 0.15 -0.4
38,193 + 9314 mRNA_946 0.20 -0.2
38,264 + 9314 mRNA_946 0.29 +0.7
38,288 - 9314 mRNA_946 0.32 +1.8
38,309 + 9314 mRNA_946 0.35 +0.3
38,382 + 9314 mRNA_946 0.44 +1.6
38,658 - 9314 mRNA_946 0.78 +1.2
38,735 - 9314 mRNA_946 0.88 +1.6
38,844 - +2.1
39,035 - +0.2
39,224 - -0.5
39,513 + 9315 mRNA_947 0.20 -0.3
39,666 + 9315 mRNA_947 0.26 -0.8
39,773 + 9315 mRNA_947 0.30 +0.4
39,883 - 9315 mRNA_947 0.35 -1.0
39,987 - 9315 mRNA_947 0.39 -0.2
40,344 + 9315 mRNA_947 0.52 -0.0
40,411 + 9315 mRNA_947 0.55 -1.1
40,602 - 9315 mRNA_947 0.62 -0.3
40,612 + 9315 mRNA_947 0.63 -0.3
41,053 - 9315 mRNA_947 0.80 -1.0
41,213 + 9315 mRNA_947 0.86 +1.0
41,256 - 9315 mRNA_947 0.87 +0.5
41,491 + -0.7
41,509 - -0.3
41,539 + -0.3
41,611 - +1.1
41,633 - -0.0
41,633 - -0.2
41,645 + -0.7
41,656 + +0.3
41,659 + -0.7
41,665 + +1.2
41,671 + +0.5
41,806 - +0.9
41,993 + +0.3
42,116 - 9316 mRNA_948 0.13 +0.1
42,122 + 9316 mRNA_948 0.13 +0.9
42,180 + 9316 mRNA_948 0.15 +1.1
42,265 + 9316 mRNA_948 0.18 -0.4
42,398 - 9316 mRNA_948 0.22 +0.3
42,441 + 9316 mRNA_948 0.23 +0.2

Or see this region's nucleotide sequence