Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_953

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9320 and 9321 are separated by 466 nucleotides mRNA_952: 9320 - Hypothetical Protein, at 50,428 to 51,116 9320 mRNA_953: 9321 - Hypothetical Protein, at 51,583 to 53,034 9321

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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50,739 - 9320 mRNA_952 0.45 -1.4
50,784 + 9320 mRNA_952 0.52 -1.0
50,932 - 9320 mRNA_952 0.73 +0.7
51,072 + -0.3
51,359 - +0.1
51,678 - -0.5
51,678 - -0.8
51,859 + 9321 mRNA_953 0.19 +0.9
51,967 - 9321 mRNA_953 0.26 +0.1
52,529 - 9321 mRNA_953 0.65 +2.1
52,918 + +0.4
53,006 + -1.6
53,014 + -0.1
53,144 + -0.7
53,428 - -1.0
53,448 - +1.1
53,910 + +1.8

Or see this region's nucleotide sequence