Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_966

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9333 and 9334 are separated by 582 nucleotides mRNA_965: 9333 - Hypothetical Protein, at 90,078 to 91,448 9333 mRNA_966: 9334 - BLAST probable GUS1-Glutamyl-tRNA synthetase [Ustilago hordei], at 92,031 to 92,569 9334

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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91,225 - 9333 mRNA_965 0.84 +0.1
91,326 + -0.6
91,357 + -0.3
91,371 + -0.0
91,468 + +0.6
91,468 + +0.1
91,469 - +1.9
91,614 - +0.0
91,615 - +0.2
91,617 + -0.2
91,642 + +0.2
91,650 - +0.3
91,805 - -0.7
91,816 + -1.9
91,951 + +0.6
91,953 + -0.5
91,970 - -0.3
91,974 - -0.3
91,988 + +1.4
92,075 - -0.0
92,116 + 9334 mRNA_966 0.16 -0.5
92,210 + 9334 mRNA_966 0.33 +2.4
92,386 + 9334 mRNA_966 0.66 +0.3
92,412 + 9334 mRNA_966 0.71 -2.5
92,413 + 9334 mRNA_966 0.71 -0.4
92,570 + -1.0
92,667 + +0.5
92,680 + +1.7
92,688 + +0.3
92,821 - +0.7
93,158 + +0.8
93,234 - -1.1
93,279 - -0.7
93,293 + +0.4
93,298 + -0.1
93,399 + +1.4
93,450 - +0.1
93,563 + +1.0

Or see this region's nucleotide sequence