Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_973

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9340 and 9341 are separated by 216 nucleotides9341 and 9342 are separated by 513 nucleotides mRNA_972: 9340 - Hypothetical Protein, at 107,840 to 108,806 9340 mRNA_973: 9341 - KOG4648 Uncharacterized conserved protein, contains LRR repeats, at 109,023 to 112,852 9341 mRNA_974: 9342 - K03236 EIF1A translation initiation factor 1A, at 113,366 to 114,313 9342

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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108,046 + 9340 mRNA_972 0.21 +0.5
108,065 + 9340 mRNA_972 0.23 +0.6
108,071 - 9340 mRNA_972 0.24 -0.1
108,084 + 9340 mRNA_972 0.25 +0.4
108,089 + 9340 mRNA_972 0.26 +0.6
108,099 - 9340 mRNA_972 0.27 -0.4
108,114 + 9340 mRNA_972 0.28 -0.5
108,117 - 9340 mRNA_972 0.29 +0.3
108,127 - 9340 mRNA_972 0.30 -1.4
108,128 - 9340 mRNA_972 0.30 -0.8
108,131 + 9340 mRNA_972 0.30 -0.6
108,131 + 9340 mRNA_972 0.30 +0.0
108,139 - 9340 mRNA_972 0.31 +0.1
108,145 + 9340 mRNA_972 0.32 -0.4
108,147 - 9340 mRNA_972 0.32 +0.4
108,166 + 9340 mRNA_972 0.34 -0.3
108,169 + 9340 mRNA_972 0.34 -0.6
108,192 - 9340 mRNA_972 0.36 +0.6
108,197 + 9340 mRNA_972 0.37 +0.1
108,215 + 9340 mRNA_972 0.39 +0.2
108,220 + 9340 mRNA_972 0.39 +0.6
108,228 - 9340 mRNA_972 0.40 -0.9
108,231 - 9340 mRNA_972 0.40 -1.2
108,233 - 9340 mRNA_972 0.41 -0.2
108,233 + 9340 mRNA_972 0.41 -0.4
108,234 - 9340 mRNA_972 0.41 -0.7
108,247 - 9340 mRNA_972 0.42 -0.2
108,248 + 9340 mRNA_972 0.42 -0.5
108,250 + 9340 mRNA_972 0.42 +0.3
108,252 - 9340 mRNA_972 0.43 +0.6
108,254 + 9340 mRNA_972 0.43 -0.8
108,257 - 9340 mRNA_972 0.43 +1.1
108,259 + 9340 mRNA_972 0.43 +0.9
108,261 - 9340 mRNA_972 0.44 -2.3
108,265 - 9340 mRNA_972 0.44 -0.0
108,266 + 9340 mRNA_972 0.44 +1.1
108,270 - 9340 mRNA_972 0.44 +0.7
108,270 - 9340 mRNA_972 0.44 -0.7
108,271 + 9340 mRNA_972 0.45 +0.4
108,271 + 9340 mRNA_972 0.45 +0.4
108,273 - 9340 mRNA_972 0.45 -0.0
108,286 - 9340 mRNA_972 0.46 -0.0
108,293 - 9340 mRNA_972 0.47 -0.5
108,297 - 9340 mRNA_972 0.47 +0.9
108,298 - 9340 mRNA_972 0.47 +0.3
108,298 + 9340 mRNA_972 0.47 -0.5
108,298 + 9340 mRNA_972 0.47 -1.3
108,304 - 9340 mRNA_972 0.48 -0.4
108,314 - 9340 mRNA_972 0.49 +0.5
108,328 + 9340 mRNA_972 0.50 -0.0
108,338 + 9340 mRNA_972 0.51 +0.3
108,357 + 9340 mRNA_972 0.53 -0.9
108,378 + 9340 mRNA_972 0.56 -0.7
108,378 - 9340 mRNA_972 0.56 +0.5
108,390 + 9340 mRNA_972 0.57 +0.2
108,398 - 9340 mRNA_972 0.58 +0.8
108,399 - 9340 mRNA_972 0.58 +0.5
108,400 - 9340 mRNA_972 0.58 -1.3
108,409 + 9340 mRNA_972 0.59 -0.3
108,424 + 9340 mRNA_972 0.60 +0.2
108,433 + 9340 mRNA_972 0.61 -0.5
108,455 + 9340 mRNA_972 0.64 +0.3
108,460 + 9340 mRNA_972 0.64 +0.1
108,461 + 9340 mRNA_972 0.64 -1.4
108,462 - 9340 mRNA_972 0.64 +0.4
108,472 + 9340 mRNA_972 0.65 +0.4
108,474 + 9340 mRNA_972 0.66 -1.9
108,496 - 9340 mRNA_972 0.68 -0.9
108,497 + 9340 mRNA_972 0.68 -0.0
108,502 + 9340 mRNA_972 0.68 -0.7
108,503 + 9340 mRNA_972 0.69 -0.2
108,504 + 9340 mRNA_972 0.69 -0.2
108,505 + 9340 mRNA_972 0.69 +1.4
108,506 + 9340 mRNA_972 0.69 +1.4
108,507 - 9340 mRNA_972 0.69 +0.1
108,516 + 9340 mRNA_972 0.70 -0.4
108,524 - 9340 mRNA_972 0.71 +0.5
108,534 - 9340 mRNA_972 0.72 +1.3
108,535 - 9340 mRNA_972 0.72 +0.8
108,536 - 9340 mRNA_972 0.72 -0.7
108,542 + 9340 mRNA_972 0.73 +0.0
108,545 - 9340 mRNA_972 0.73 -0.1
108,546 - 9340 mRNA_972 0.73 +1.5
108,547 + 9340 mRNA_972 0.73 +1.9
108,554 - 9340 mRNA_972 0.74 -1.6
108,555 + 9340 mRNA_972 0.74 -3.1
108,558 + 9340 mRNA_972 0.74 +0.8
108,559 + 9340 mRNA_972 0.74 -0.1
108,588 + 9340 mRNA_972 0.77 +0.7
108,597 - 9340 mRNA_972 0.78 +0.3
108,626 + 9340 mRNA_972 0.81 -0.4
108,647 + 9340 mRNA_972 0.83 +1.7
108,651 - 9340 mRNA_972 0.84 +1.7
108,666 + 9340 mRNA_972 0.85 -0.3
108,762 + -0.5
108,772 + -0.6
108,772 + -0.0
108,783 + +0.7
108,789 - -1.0
108,794 - +0.4
108,796 + -1.1
108,801 + -0.0
108,802 + +0.0
108,803 + -0.5
108,807 + -0.4
108,807 + -1.7
108,808 + +1.1
108,816 - -0.3
108,818 + -0.1
108,830 - +0.7
108,836 - -1.0
108,930 - +0.6
108,940 + -0.5
108,947 - +1.3
108,972 - +0.7
108,988 + +0.5
109,059 + +1.3
109,094 - +0.2
109,098 + +0.8
109,100 - -1.6
109,238 + -2.5
109,682 - 9341 mRNA_973 0.17 +3.0
109,974 - 9341 mRNA_973 0.25 -0.7
110,040 + 9341 mRNA_973 0.27 -0.5
110,106 - 9341 mRNA_973 0.28 +0.2
110,288 + 9341 mRNA_973 0.33 +0.4
110,320 + 9341 mRNA_973 0.34 +0.2
110,427 + 9341 mRNA_973 0.37 +1.0
110,829 - 9341 mRNA_973 0.47 +1.1
111,855 + 9341 mRNA_973 0.74 -0.9
112,456 + 9341 mRNA_973 0.90 -1.3
112,744 + -2.1
112,748 - +1.2
112,751 - +0.4
112,859 + -0.5
112,868 - -0.0
113,020 + +0.9
113,070 + -0.0
113,161 - +0.0
113,189 + -1.1

Or see this region's nucleotide sequence