Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_981

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9348 and 9349 are separated by 295 nucleotides mRNA_980: 9348 - K03946 NDUFA2 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 2, at 126,014 to 126,825 9348 mRNA_981: 9349 - K11097 SNRPE, SME small nuclear ribonucleoprotein E, at 127,121 to 128,038 9349

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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126,927 - +0.2
126,935 + -0.7
126,936 - +1.0
126,947 + -0.1
126,959 + -0.7
126,978 - +0.0
127,071 - -0.4
127,573 + 9349 mRNA_981 0.49 -1.2
128,104 + -0.6
128,242 + +0.2
128,376 - -2.6
128,389 - -0.1
128,396 + +0.9
128,505 - +1.9
128,689 + -0.6
128,692 - -0.9
128,692 + -1.8
128,699 + -0.8
128,810 - -0.0
128,967 + +0.1

Or see this region's nucleotide sequence