Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1018

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9385 and 9386 are separated by 248 nucleotides9386 and 9387 are separated by 364 nucleotides mRNA_1017: 9385 - BLAST putative pre-mrna-splicing factor 38b [Diaporthe ampe..., at 217,643 to 219,086 9385 mRNA_1018: 9386 - KOG3488 Dolichol phosphate-mannose regulatory protein (DPM2), at 219,335 to 219,910 9386 mRNA_1019: 9387 - K02835 prfA, MTRF1, MRF1 peptide chain release factor 1, at 220,275 to 221,904 9387

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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219,040 + +0.3
219,173 + +0.7
219,319 + +0.6
219,331 - -2.1
219,928 + +0.2
220,042 + -1.6
220,046 + +0.1
220,188 + +2.0
220,208 - +1.3

Or see this region's nucleotide sequence