Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1031

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9399 and 9400 are separated by 766 nucleotides mRNA_1031: 9399 - Hypothetical Protein, at 243,665 to 244,261 9399 mRNA_1032: 9400 - Hypothetical Protein, at 245,028 to 245,336 9400

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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242,903 - +0.8
242,932 + +0.0
243,494 - +0.7
243,623 - +0.4
243,626 + -1.0
243,692 + -0.8
243,773 - 9399 mRNA_1031 0.18 +0.8
243,995 - 9399 mRNA_1031 0.55 +1.1
244,184 + 9399 mRNA_1031 0.87 -0.1
244,251 + -0.0
244,270 + -0.6
244,296 + -0.8
244,379 - -0.8
244,470 + +0.9
244,515 + -0.7
244,528 - +2.2
244,541 - -0.7
244,543 - +1.0
244,847 + -0.9
244,987 + -0.9
244,992 + -1.7
244,994 + -0.8
244,995 - +0.4
245,246 - 9400 mRNA_1032 0.71 -0.9

Or see this region's nucleotide sequence