Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1034

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9401 and 9402 are separated by 37 nucleotides9402 and 9403 are separated by 411 nucleotides mRNA_1033: 9401 - KOG4653 Uncharacterized conserved protein, at 245,440 to 249,406 9401 mRNA_1034: 9402 - SMART-N-terminal domain of CBF1 interacting co-repressor CIR-SM01083, at 249,444 to 250,770 9402 mRNA_1035: 9403 - Hypothetical Protein, at 251,182 to 253,017 9403

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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250,187 - 9402 mRNA_1034 0.56 -0.7
250,244 + 9402 mRNA_1034 0.60 -0.0
250,421 - 9402 mRNA_1034 0.74 +0.2
250,809 + +0.0
250,821 + +0.4
250,979 + +0.4
251,125 - +0.6
251,126 - +0.2
251,258 + -0.2
251,265 - +0.1
251,298 + +0.1
251,386 - 9403 mRNA_1035 0.11 -0.7
251,429 + 9403 mRNA_1035 0.13 -0.1
251,551 + 9403 mRNA_1035 0.20 -0.4
251,552 + 9403 mRNA_1035 0.20 +0.6
251,700 - 9403 mRNA_1035 0.28 +0.2

Or see this region's nucleotide sequence