Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1044

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9412 and 9413 are separated by 539 nucleotides mRNA_1044: 9412 - K07765 MBTPS2 S2P endopeptidase, at 266,610 to 267,641 9412 mRNA_1045: 9413 - Hypothetical Protein, at 268,181 to 268,879 9413

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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265,622 + +0.5
265,641 - +0.6
265,724 - +0.5
265,824 + -0.6
266,093 + -0.7
266,409 + +0.3
266,529 + -0.9
266,531 + +0.1
266,617 - +0.1
266,795 - 9412 mRNA_1044 0.18 -1.3
266,801 + 9412 mRNA_1044 0.19 -0.3
266,942 + 9412 mRNA_1044 0.32 +0.7
267,240 - 9412 mRNA_1044 0.61 +0.1

Or see this region's nucleotide sequence