Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1054

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9421 and 9422 are separated by 112 nucleotides mRNA_1053: 9421 - KOG3856 Uncharacterized conserved protein, at 287,075 to 287,902 9421 mRNA_1054: 9422 - K09419 HSFF heat shock transcription factor, other eukaryote, at 288,015 to 290,756 9422

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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287,085 + -0.0
287,966 + -0.6
290,843 - +1.0
290,850 + -0.4
290,879 + -2.5
290,883 - +0.5
290,945 - -0.2
290,950 - +0.4
290,967 + -0.1
290,967 + -0.3
290,982 + -0.9
290,985 + +0.9
290,988 - -2.9
291,002 - -0.0
291,083 - +0.2
291,088 - -0.6
291,093 - -0.1
291,102 + -1.2
291,146 - -0.2
291,157 - -0.8
291,158 + +0.8
291,199 + -0.8
291,253 - -1.5
291,269 + +0.4
291,321 - +0.2
291,383 - -1.7
291,415 + +1.5
291,429 + +0.5
291,444 - +0.2
291,448 - -2.6
291,460 + -0.9
291,460 + -1.1
291,462 - +0.1
291,467 + -2.1
291,482 + +2.2
291,500 + -0.1
291,513 + +0.4
291,627 - +1.7
291,633 - -0.8
291,642 + -0.3
291,662 - +0.2
291,664 - +1.2
291,668 + -0.2
291,669 + -0.4
291,681 + +0.6
291,685 + -0.3
291,685 - -0.2
291,739 + -1.0
291,740 + +0.8
291,743 - -0.2
291,747 + +1.2
291,748 - -2.0
291,752 - -0.1

Or see this region's nucleotide sequence