Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1057

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9424 and 9425 are separated by 40 nucleotides9425 and 9426 are separated by 321 nucleotides mRNA_1056: 9424 - Hypothetical Protein, at 294,531 to 295,734 9424 mRNA_1057: 9425 - K00654 SPT serine palmitoyltransferase, at 295,775 to 298,601 9425 mRNA_1058: 9426 - HMMPfam-Protein of unknown function (DUF1115)-PF06544,PIRSF--PIRSF038021,SUPERFAMILY--SSF54495, at 298,923 to 300,090 9426

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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295,105 - 9424 mRNA_1056 0.48 +0.3
295,379 - 9424 mRNA_1056 0.70 -0.2
295,392 + 9424 mRNA_1056 0.72 +0.4
295,535 + 9424 mRNA_1056 0.83 +1.6
295,535 + 9424 mRNA_1056 0.83 +0.1
295,812 - -0.1
295,839 - +1.2
295,841 + +0.2
295,857 + -0.2
295,863 + +0.3
295,992 - -0.5
295,997 - +0.1
296,000 - +0.5
296,190 + 9425 mRNA_1057 0.15 -1.8
298,811 - -0.1
298,816 + -0.8
298,933 - -1.0
299,089 + 9426 mRNA_1058 0.14 +3.0
299,258 + 9426 mRNA_1058 0.29 +1.3
299,412 + 9426 mRNA_1058 0.42 -0.4
299,540 - 9426 mRNA_1058 0.53 +0.4

Or see this region's nucleotide sequence