Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1080

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9447 and 9448 are separated by 269 nucleotides9448 and 9449 are separated by 560 nucleotides mRNA_1079: 9447 - HMMPfam-Frag1/DRAM/Sfk1 family-PF10277, at 363,349 to 364,713 9447 mRNA_1080: 9448 - Hypothetical Protein, at 364,983 to 366,147 9448 mRNA_1081: 9449 - Hypothetical Protein, at 366,708 to 367,893 9449

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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364,029 + 9447 mRNA_1079 0.50 +0.4
364,030 - 9447 mRNA_1079 0.50 +1.7
364,379 - 9447 mRNA_1079 0.75 +0.2
364,603 + +1.3
364,938 - +0.1
365,063 + -0.4
365,322 + 9448 mRNA_1080 0.29 +1.9
365,903 + 9448 mRNA_1080 0.79 -0.8
365,903 + 9448 mRNA_1080 0.79 +0.4
365,910 + 9448 mRNA_1080 0.80 +0.7
365,914 + 9448 mRNA_1080 0.80 +0.4
366,146 + +0.5
366,178 + +0.3
366,337 - +1.5
366,376 - -0.6
366,382 - -0.5
366,395 - +1.5
366,434 - -0.7
366,524 - +1.9
366,527 + -0.8
366,539 - +0.2
366,617 + +0.3
366,844 - 9449 mRNA_1081 0.11 +0.6
366,970 + 9449 mRNA_1081 0.22 +1.0
367,125 - 9449 mRNA_1081 0.35 -0.7

Or see this region's nucleotide sequence