Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1095

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9462 and 9463 are separated by 489 nucleotides9463 and 9464 are separated by 80 nucleotides mRNA_1094: 9462 - HMMPfam-Frag1/DRAM/Sfk1 family-PF10277, at 393,718 to 395,326 9462 mRNA_1095: 9463 - KOG2741 Dimeric dihydrodiol dehydrogenase, at 395,816 to 397,150 9463 mRNA_1096: 9464 - KOG1611 Predicted short chain-type dehydrogenase, at 397,231 to 398,090 9464

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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395,065 + 9462 mRNA_1094 0.84 -0.7
395,211 - +0.5
395,247 + -2.2
395,314 - -0.0
395,344 + -0.1
395,473 + -0.7
395,657 - -0.4
395,815 - +0.1
395,823 + +1.0
396,101 + 9463 mRNA_1095 0.21 +0.1
396,114 + 9463 mRNA_1095 0.22 +2.2
396,539 - 9463 mRNA_1095 0.54 -0.1
396,955 - 9463 mRNA_1095 0.85 -0.2
397,100 + +0.9
397,134 - +0.4
397,290 + +1.2
397,510 - 9464 mRNA_1096 0.32 +2.1
397,788 + 9464 mRNA_1096 0.65 +0.5
397,992 + 9464 mRNA_1096 0.88 -1.1

Or see this region's nucleotide sequence