Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1135

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9502 and 9503 are separated by 80 nucleotides9503 and 9504 are separated by 164 nucleotides mRNA_1134: 9502 - K10685 UBLE1B, SAE2, UBA2 ubiquitin-like 1-activating enzyme E1 B, at 486,647 to 489,747 9502 mRNA_1135: 9503 - K04532 NAE1, APPBP1 amyloid beta precursor protein binding protein 1, at 489,828 to 492,159 9503 mRNA_1136: 9504 - Hypothetical Protein, at 492,324 to 493,013 9504

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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489,800 + -1.3
489,803 + +0.7
489,811 - -2.0
489,913 - +1.9
492,299 + -1.1
492,332 - +0.5
492,387 + +1.1
492,480 + 9504 mRNA_1136 0.23 -0.9
492,494 - 9504 mRNA_1136 0.25 -0.2
492,572 - 9504 mRNA_1136 0.36 -0.2
492,591 + 9504 mRNA_1136 0.39 +3.0
492,744 + 9504 mRNA_1136 0.61 -0.5
492,831 + 9504 mRNA_1136 0.73 -0.0
492,832 - 9504 mRNA_1136 0.74 +1.3
492,860 + 9504 mRNA_1136 0.78 -1.2
493,010 + +0.4
493,029 + +1.8

Or see this region's nucleotide sequence