Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1139

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9506 and 9507 are separated by 556 nucleotides9507 and 9508 overlap by 9 nucleotides mRNA_1138: 9506 - K12598 MTR4, SKIV2L2 ATP-dependent RNA helicase DOB1, at 495,296 to 498,898 9506 mRNA_1139: 9507 - KOG0948 Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily, at 499,455 to 501,152 9507 mRNA_1140: 9508 - Hypothetical Protein, at 501,144 to 502,364 9508

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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498,904 + +1.1
498,905 - +1.1
499,015 - +0.2
499,031 + +0.0
499,042 + -0.1
499,058 - +1.0
499,059 - +0.3
499,063 + -0.8
499,090 + +0.2
499,169 - +0.7
499,182 + -2.1
499,276 + +0.5
499,377 + -2.8
499,503 - -0.4
499,504 - +1.9
499,523 + -3.0
499,795 - 9507 mRNA_1139 0.20 +0.5
500,526 + 9507 mRNA_1139 0.63 -0.6
500,934 - 9507 mRNA_1139 0.87 +1.7
501,104 + -0.6
501,115 + -0.0
501,514 + 9508 mRNA_1140 0.30 +0.1
501,645 + 9508 mRNA_1140 0.41 -2.8
501,657 - 9508 mRNA_1140 0.42 -0.4
501,665 + 9508 mRNA_1140 0.43 +0.8
501,711 - 9508 mRNA_1140 0.46 +0.2
501,725 + 9508 mRNA_1140 0.48 -0.6
501,819 + 9508 mRNA_1140 0.55 -1.5
501,830 - 9508 mRNA_1140 0.56 +0.5
501,948 - 9508 mRNA_1140 0.66 +1.0
501,979 - 9508 mRNA_1140 0.68 +0.2
501,980 - 9508 mRNA_1140 0.68 +0.3
502,126 + 9508 mRNA_1140 0.80 -0.6
502,134 - 9508 mRNA_1140 0.81 +0.9
502,139 + 9508 mRNA_1140 0.81 +0.4

Or see this region's nucleotide sequence