Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1151

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9518 and 9519 are separated by 940 nucleotides9519 and 9520 are separated by 537 nucleotides mRNA_1150: 9518 - Hypothetical Protein, at 520,283 to 520,867 9518 mRNA_1151: 9519 - Hypothetical Protein, at 521,808 to 522,539 9519 mRNA_1152: 9520 - KOG0069 Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily), at 523,077 to 524,441 9520

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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520,831 + -0.5
520,846 + -1.0
520,902 + -1.6
520,958 - -2.6
521,102 - +0.1
521,376 - +0.5
521,536 + -0.5
521,548 + -0.1
521,716 + +0.3
521,832 + +0.1
521,872 + +0.1
521,975 + 9519 mRNA_1151 0.23 -0.5
522,358 - 9519 mRNA_1151 0.75 -1.4
522,516 - +0.7
522,540 + -0.9
522,615 + -0.3
522,692 - -0.4
522,695 + +0.1
522,713 - +0.9
522,849 + -0.5
522,853 - +0.5
522,861 + -0.8
522,864 - +0.1
522,866 - -0.3
522,867 - -0.9
522,867 + +0.6
522,971 - +0.3
523,449 - 9520 mRNA_1152 0.27 +0.1

Or see this region's nucleotide sequence