Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1155

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9522 and 9523 are separated by 838 nucleotides9523 and 9524 are separated by 526 nucleotides mRNA_1154: 9522 - Hypothetical Protein, at 526,597 to 527,643 9522 mRNA_1155: 9523 - ProSiteProfiles-CBS domain profile.-PS51371,SUPERFAMILY--SSF54631, at 528,482 to 529,504 9523 mRNA_1156: 9524 - Hypothetical Protein, at 530,031 to 531,445 9524

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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527,551 - -0.6
527,656 + -0.6
528,215 - -0.4
528,373 - +1.8
528,439 - +0.2
528,537 + -0.7
529,112 - 9523 mRNA_1155 0.62 -0.4
529,114 + 9523 mRNA_1155 0.62 -0.3
529,237 + 9523 mRNA_1155 0.74 +0.7
529,411 + -0.2
529,541 + -0.8
529,544 - +0.2
529,547 + +0.7
529,547 + +0.0
529,565 + +0.2
529,661 + +0.7
529,722 + +0.1
529,854 - +3.0
529,871 + +0.5
529,874 + -0.9
529,885 + +0.3
530,004 - -0.7
530,176 - 9524 mRNA_1156 0.10 +0.6
530,183 + 9524 mRNA_1156 0.11 -1.9
530,183 + 9524 mRNA_1156 0.11 +0.3
530,331 - 9524 mRNA_1156 0.21 -0.8
530,466 - 9524 mRNA_1156 0.31 -1.0

Or see this region's nucleotide sequence