Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1159

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9526 and 9527 are separated by 675 nucleotides9527 and 9528 are separated by 32 nucleotides mRNA_1158: 9526 - Hypothetical Protein, at 533,999 to 537,881 9526 mRNA_1159: 9527 - HMMPfam-Archaeal ATPase-PF01637,SUPERFAMILY--SSF52540, at 538,557 to 540,883 9527 mRNA_1160: 9528 - KOG4159 Predicted E3 ubiquitin ligase, at 540,916 to 543,538 9528

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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537,757 + -1.1
537,854 - -0.0
537,894 - -0.2
538,038 + +0.5
538,041 + +1.8
538,297 + -0.6
538,306 + -0.7
538,337 - +0.3
538,499 + +0.3
538,513 - +0.8
538,513 - +1.2
538,516 - -0.5
538,646 - +0.2
538,661 - -1.8
538,668 + -0.2
538,668 + -0.0
539,075 - 9527 mRNA_1159 0.22 +1.4
539,246 - 9527 mRNA_1159 0.30 +0.2
539,378 + 9527 mRNA_1159 0.35 -1.9
539,772 - 9527 mRNA_1159 0.52 +0.3
539,930 - 9527 mRNA_1159 0.59 +1.8
539,988 + 9527 mRNA_1159 0.61 +0.9
540,016 - 9527 mRNA_1159 0.63 +0.8
540,047 - 9527 mRNA_1159 0.64 -0.3
540,091 - 9527 mRNA_1159 0.66 +0.5
540,239 - 9527 mRNA_1159 0.72 +0.5
540,278 + 9527 mRNA_1159 0.74 -0.8
540,284 - 9527 mRNA_1159 0.74 -1.4
540,366 + 9527 mRNA_1159 0.78 +0.7
540,401 - 9527 mRNA_1159 0.79 -0.1
540,471 - 9527 mRNA_1159 0.82 -0.4
540,562 + 9527 mRNA_1159 0.86 -0.5
540,650 - 9527 mRNA_1159 0.90 +1.3
540,777 + -0.0
540,849 + +0.6
540,937 - -1.0

Or see this region's nucleotide sequence