Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1202

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9570 and 9571 are separated by 688 nucleotides mRNA_1202: 9570 - K11253 H3 histone H3, at 640,154 to 640,968 9570 mRNA_1203: 9571 - K01049 ACHE acetylcholinesterase, at 641,657 to 643,946 9571

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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639,300 - +0.8
639,315 - -1.1
639,322 + +2.5
639,325 + +1.2
639,731 - +0.6
639,736 - +0.3
639,737 + +0.7
639,738 + -0.5
639,740 + -0.8
639,744 + +0.2
639,746 - -0.3
639,749 - +1.6
639,754 - -0.7
639,759 - +0.3
639,761 - +0.8
639,763 + +0.5
639,764 + -1.5
639,765 + +0.3
639,766 + +0.9
639,766 - +0.5
639,767 - +1.1
639,769 - -1.0
639,771 - +0.8
639,780 - -0.9
639,781 + -1.1
639,781 + -1.0
639,783 + -0.5
639,790 - -0.9
639,810 + +0.4
639,817 - -0.1
639,852 - +0.4
639,854 - +0.8
639,876 - +0.7
639,876 - -0.6
640,019 - -1.1
640,033 - -0.1
640,280 + 9570 mRNA_1202 0.15 -0.1
640,325 + 9570 mRNA_1202 0.21 +2.0
640,465 + 9570 mRNA_1202 0.38 +0.0
640,469 + 9570 mRNA_1202 0.39 -0.9
641,169 + -0.1
641,177 - +0.3
641,207 - -1.0
641,310 - -0.7
641,318 - -1.0
641,322 - +2.0
641,350 + -0.3
641,365 + +0.4
641,370 + +0.6
641,392 + +0.1
641,395 + +0.5
641,408 - -0.5
641,414 - +0.7
641,417 - +0.1
641,422 + +0.1
641,429 + -1.9
641,485 + -0.1
641,491 + -1.7
641,493 - +0.6
641,494 + -1.0
641,510 + -0.4
641,527 + +1.2
641,528 + +1.6
641,544 + +0.8
641,562 - +0.2
641,594 + +0.7
641,614 - +1.8
641,628 - +0.3
641,667 - +0.4
641,849 + +1.1
641,921 + 9571 mRNA_1203 0.12 +0.4
641,948 + 9571 mRNA_1203 0.13 +0.6
641,957 + 9571 mRNA_1203 0.13 -0.2

Or see this region's nucleotide sequence