Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1210

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9577 and 9578 are separated by 246 nucleotides9578 and 9579 are separated by 160 nucleotides mRNA_1209: 9577 - Hypothetical Protein, at 656,238 to 657,706 9577 mRNA_1210: 9578 - K13076 SLD Delta8-fatty-acid desaturase, at 657,953 to 659,955 9578 mRNA_1211: 9579 - K15078 SLX1 structure-specific endonuclease subunit SLX1, at 660,116 to 662,467 9579

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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657,705 - +0.7
657,764 - +0.8
657,845 - -0.4
657,847 + -3.2
657,858 - +0.0
657,873 - +0.7
658,299 + 9578 mRNA_1210 0.17 -0.8
658,556 + 9578 mRNA_1210 0.30 +0.5
659,920 - +0.6
659,935 - -0.2
660,304 - +1.3
660,650 - 9579 mRNA_1211 0.23 -1.0

Or see this region's nucleotide sequence