Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1248

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9615 and 9616 are separated by 209 nucleotides9616 and 9617 are separated by 526 nucleotides mRNA_1247: 9615 - Hypothetical Protein, at 745,328 to 746,839 9615 mRNA_1248: 9616 - KOG1289 Amino acid transporters, at 747,049 to 750,301 9616 mRNA_1249: 9617 - Hypothetical Protein, at 750,828 to 752,844 9617

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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746,143 + 9615 mRNA_1247 0.54 +0.0
746,257 + 9615 mRNA_1247 0.61 -0.1
746,341 - 9615 mRNA_1247 0.67 -0.2
746,380 + 9615 mRNA_1247 0.70 +0.4
746,521 + 9615 mRNA_1247 0.79 -0.1
746,831 - +0.5
747,123 + +0.7
747,147 + -4.4
747,251 + +1.5
747,491 - 9616 mRNA_1248 0.14 -0.3
747,560 + 9616 mRNA_1248 0.16 -0.6
747,573 + 9616 mRNA_1248 0.16 -0.5
747,694 + 9616 mRNA_1248 0.20 +1.0
747,702 + 9616 mRNA_1248 0.20 +0.3
747,732 + 9616 mRNA_1248 0.21 +0.4
747,839 + 9616 mRNA_1248 0.24 +0.2
747,988 + 9616 mRNA_1248 0.29 +0.1
748,426 + 9616 mRNA_1248 0.42 +0.2
748,729 + 9616 mRNA_1248 0.52 -1.7
748,887 - 9616 mRNA_1248 0.57 -0.5
748,987 + 9616 mRNA_1248 0.60 +0.1
749,315 + 9616 mRNA_1248 0.70 +0.1
749,371 - 9616 mRNA_1248 0.71 +1.0
749,440 + 9616 mRNA_1248 0.74 +0.4
749,645 - 9616 mRNA_1248 0.80 +0.9
749,745 - 9616 mRNA_1248 0.83 +0.4
749,801 + 9616 mRNA_1248 0.85 -0.6
749,881 + 9616 mRNA_1248 0.87 -0.9
749,913 - 9616 mRNA_1248 0.88 +1.1
749,932 - 9616 mRNA_1248 0.89 +0.4
749,933 + 9616 mRNA_1248 0.89 -0.6
750,023 - -0.1
750,056 - +0.8
750,125 - -0.2
750,154 - +0.9
750,158 - +0.3
750,184 - +0.6
750,204 - +0.4
750,213 - +1.1
750,217 - +2.3
750,220 + +2.0
750,226 - -0.7
750,328 - +0.1
750,469 + +0.2
750,496 - -0.1
750,506 + -0.1
750,559 + -0.4
750,570 + +0.4
750,660 + -0.0
750,690 + +1.0
750,824 + +1.0
750,838 - +1.4
751,275 + 9617 mRNA_1249 0.22 -0.6

Or see this region's nucleotide sequence