Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1258

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9625 and 9626 are separated by 130 nucleotides9626 and 9627 are separated by 425 nucleotides mRNA_1257: 9625 - KOG1947 Leucine rich repeat proteins, some proteins contain F-box, at 768,823 to 770,242 9625 mRNA_1258: 9626 - Hypothetical Protein, at 770,373 to 771,317 9626 mRNA_1259: 9627 - K10887 DCLRE1C, ARTEMIS, SCIDA DNA cross-link repair 1C protein, at 771,743 to 774,831 9627

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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769,398 - 9625 mRNA_1257 0.40 +1.3
769,450 + 9625 mRNA_1257 0.44 -0.4
769,512 - 9625 mRNA_1257 0.49 -0.7
769,541 + 9625 mRNA_1257 0.51 -1.6
769,692 - 9625 mRNA_1257 0.61 +0.2
769,693 + 9625 mRNA_1257 0.61 -0.3
769,695 + 9625 mRNA_1257 0.61 -0.1
769,950 + 9625 mRNA_1257 0.79 +0.3
769,983 - 9625 mRNA_1257 0.82 +0.1
770,068 + 9625 mRNA_1257 0.88 +0.8
770,267 + +0.5
770,409 - +2.5
771,447 + +0.3
771,577 - +1.3
771,584 + +1.4
771,587 + -0.3
771,719 + +0.5
772,016 + +1.4
772,145 + 9627 mRNA_1259 0.13 +0.4

Or see this region's nucleotide sequence