Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1277

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9644 and 9645 are separated by 151 nucleotides9645 and 9646 are separated by 606 nucleotides mRNA_1276: 9644 - K01070 frmB, ESD, fghA S-formylglutathione hydrolase, at 815,898 to 817,599 9644 mRNA_1277: 9645 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 817,751 to 818,897 9645 mRNA_1278: 9646 - KOG1414 Transcriptional activator FOSB/c-Fos and related bZIP transcription factors, at 819,504 to 821,830 9646

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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816,874 + 9644 mRNA_1276 0.57 +0.8
816,875 - 9644 mRNA_1276 0.57 +0.4
817,059 + 9644 mRNA_1276 0.68 +0.7
817,420 + 9644 mRNA_1276 0.89 +0.7
817,493 + +2.4
817,794 - +1.1
818,402 + 9645 mRNA_1277 0.57 -0.3
818,512 + 9645 mRNA_1277 0.66 +0.2
818,527 - 9645 mRNA_1277 0.68 -1.1
818,533 + 9645 mRNA_1277 0.68 -0.2
818,536 + 9645 mRNA_1277 0.68 -1.9
818,789 - -0.1
818,940 + +0.0
818,998 - -0.2
819,004 + -0.7
819,103 + +2.4
819,180 + +1.1
819,274 - -1.5
819,447 - +0.0
819,829 - 9646 mRNA_1278 0.14 +0.8
819,837 + 9646 mRNA_1278 0.14 -0.7

Or see this region's nucleotide sequence