Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1306

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_1306: 9674 - HMMPfam-RNase H-PF00075,ProSiteProfiles-RNase H domain profile.-PS50879,SUPERFAMILY--SSF53098, at 881,948 to 882,184 9674

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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880,962 - -0.4
880,975 - +1.4
881,000 - -0.6
881,139 - -0.3
881,139 - +0.2
881,148 + +0.8
881,259 + -0.6
881,261 - +0.3
881,272 - +1.8
881,311 + +1.7
881,313 + -0.3
881,418 - +1.2
881,420 - -0.6
881,432 + -0.1
881,437 + -0.1
881,450 - +0.9
881,452 - +0.5
881,460 + -0.3
881,547 + -0.6
881,900 + +1.1
882,013 + 9674 mRNA_1306 0.27 -0.1
882,013 + 9674 mRNA_1306 0.27 +0.5
882,042 + 9674 mRNA_1306 0.40 -0.2
882,187 - -0.0
882,192 + +0.5
882,247 - -0.1
882,338 - -1.1
882,344 + +1.1
882,349 + -2.1
882,355 - +0.7
882,357 + +0.5
882,369 + -0.2
882,379 + -0.7
882,386 - -0.3
882,387 - -1.3
882,387 - +0.5
882,387 - +0.3
882,391 + -0.1
882,392 + +1.0
882,405 - +0.3
882,413 - -1.2
882,532 - -1.9
882,549 - +1.0
882,693 + +2.1
882,830 - +0.2
882,915 + +0.1
882,918 + +1.0
882,957 - +0.0
882,959 - -0.1
883,096 + +1.1

Or see this region's nucleotide sequence