Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1324

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9691 and 9692 are separated by 526 nucleotides mRNA_1323: 9691 - Hypothetical Protein, at 929,685 to 931,310 9691 mRNA_1324: 9692 - Hypothetical Protein, at 931,837 to 933,855 9692

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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930,867 - 9691 mRNA_1323 0.73 -1.6
930,909 - 9691 mRNA_1323 0.75 +0.3
930,911 - 9691 mRNA_1323 0.75 +1.2
931,056 - 9691 mRNA_1323 0.84 +0.5
931,105 + 9691 mRNA_1323 0.87 -2.2
931,196 - -0.0
931,535 + -0.3
931,627 - -0.1
931,629 + -0.9
931,682 + -1.7
931,708 + +0.1
931,801 + +0.0
931,929 - +0.2
931,935 + -0.6
931,942 - +0.5
932,059 + 9692 mRNA_1324 0.11 +0.5
932,348 - 9692 mRNA_1324 0.25 +0.2
932,355 + 9692 mRNA_1324 0.26 +1.9
932,441 + 9692 mRNA_1324 0.30 -1.1
932,441 - 9692 mRNA_1324 0.30 +0.2
932,484 - 9692 mRNA_1324 0.32 -0.3
932,489 - 9692 mRNA_1324 0.32 -3.0
932,526 - 9692 mRNA_1324 0.34 +0.3
932,871 + 9692 mRNA_1324 0.51 -0.2
933,005 + 9692 mRNA_1324 0.58 +0.4
933,025 - 9692 mRNA_1324 0.59 -0.3
933,070 + 9692 mRNA_1324 0.61 +1.1
933,248 - 9692 mRNA_1324 0.70 +0.6
933,344 + 9692 mRNA_1324 0.75 -0.7
933,396 + 9692 mRNA_1324 0.77 -1.2
933,530 - 9692 mRNA_1324 0.84 +0.3
933,554 + 9692 mRNA_1324 0.85 -0.3
933,843 + +1.6
933,877 - +2.1
933,911 + -0.1
933,927 + -0.2
933,938 - -0.5
933,942 - +0.7
933,984 + -2.3
933,990 - +0.3
934,003 - +1.4
934,284 + -0.4
934,292 - +0.1
934,322 + +1.6
934,378 - +0.1
934,416 - -0.4
934,417 + +1.1
934,701 + -1.4
934,734 + +0.2
934,811 - -1.6

Or see this region's nucleotide sequence